Data Exploration Resources
Grab Google Earth Metadata for Your Sample Sites
https://github.com/emlys/eDNA-metadata
Jupyter Notebook by Emily Soth. Grab various climate, satellite, and human impact values for points of your choice from temporal windows and pixel sizes you set. Cloud removal can be automated for analysis-ready environmental metadata for your samples.
Inspired by Meixi Lin’s recent submission to Ecological Applications you can read HERE
Make a phylogeny of CALeDNA-style taxon lists with the Open Tree of Life
https://github.com/CALeDNA/TaxonListToOpenTreePhylogeny/blob/master/BigBio.ipynb
Jupyter Notebook by Emily-Jane McTavish to generate a tree file that can imported into the Interacted Tree of Life and annotated from there.
Check out Open Tree HERE
Interested but don’t know how to get started? Get in touch and we’ll do our best to help.